Monocyte, neutrophil, and whole blood transcriptome dynamics following ischemic stroke - BMC Medicine

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A study published in BMCMedicine identifies the dynamics of gene expression after ischemic stroke. This finding is useful for understanding of immune and clotting responses and may assist in time-targeted, cell-specific therapy.

There are also differences between SOM profiles in whole blood for different causes of stroke. “Positive regulation of IL-1β secretion” genes peak in the first 24 h in CE and LV strokes, whereas in SV stroke IL-1 genes decrease at 24 h and then recover at times after 24 h.

This study employed single samples from single patients at different times. Thus, the changes of gene expression represent the average of multiple patients over the times stipulated. We have shown that individual genetic variation plays a key role in the specific expression response after stroke []. Our approach presented here based on the availability of samples would include inter-individual variability of expression as compared to differences measured in a single subject over time.

A strength of the study was the multiple analytical approaches used, including differential expression, GEDI, SOM, and WGCNA, with each providing insight to the complexity and dynamics of gene expression changes after stroke. SOM in particular was able to demonstrate how pathways changed over time for each cell type and cause of stroke. WGCNA identified modules of co-expressed genes and associated hub genes that changed over time.

Differentially expressed genes have distinctive trajectories for all IS etiologies analyzed, which allows refinement of critical genes and functions at specific time points after stroke. Altogether, the identified changes in gene expression and pathways over time are critical for understanding how the immune and clotting systems change dynamically after stroke, and point to the complexities of identifying biomarkers and treatment targets for stroke.Gene expression data and clinical parameters of the subjects studied are available at

 

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